Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CGGBP1CGG triplet repeat binding protein 1. (167 aa)    
Predicted Functional Partners:
MRM1
Mitochondrial rRNA methyltransferase 1.
    
   0.872
SPIN1
Uncharacterized protein.
    
   0.859
FMR1
Fragile X mental retardation 1.
   
 0.713
URB1
URB1 ribosome biogenesis homolog.
      
 0.609
THAP12
THAP domain containing 12.
    
 0.581
GIN1
Gypsy retrotransposon integrase 1.
    
 0.562
K7GAE2_PELSI
Integrase catalytic domain-containing protein.
    
 0.562
TMEM209
Transmembrane protein 209.
      
 0.542
KCTD1
Potassium channel tetramerization domain containing 1.
     
 0.529
KCTD15
Potassium channel tetramerization domain containing 15.
     
 0.529
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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