LOC102450092 protein (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC102450092

Histone H4. (103 aa)

Predicted Functional Partners:

ARID4B

0.744

ARID4A

0.744

HAT1

0.688

KMT5A

0.655

KAT2B

0.642

KMT2C

0.638

MYSM1

0.633

RPS27A

0.626

K7FUK6_PELSI

0.625

KDM6A

0.625

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSPSIP00000016834	ENSPSIP00000012923	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.769
ARID4A	K7FUK6_PELSI	ENSPSIP00000016834	ENSPSIP00000011716	AT-rich interaction domain 4A.	JmjC domain-containing protein.	0.717
ARID4A	KAT2B	ENSPSIP00000016834	ENSPSIP00000009860	AT-rich interaction domain 4A.	Lysine acetyltransferase 2B.	0.475
ARID4A	KDM6A	ENSPSIP00000016834	ENSPSIP00000013275	AT-rich interaction domain 4A.	Uncharacterized protein.	0.717
ARID4A	LOC102450092	ENSPSIP00000016834	ENSPSIP00000001575	AT-rich interaction domain 4A.	Histone H4.	0.744
ARID4A	MYSM1	ENSPSIP00000016834	ENSPSIP00000004076	AT-rich interaction domain 4A.	Myb like, SWIRM and MPN domains 1.	0.573
ARID4B	ARID4A	ENSPSIP00000012923	ENSPSIP00000016834	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.769
ARID4B	K7FUK6_PELSI	ENSPSIP00000012923	ENSPSIP00000011716	AT-rich interaction domain 4B.	JmjC domain-containing protein.	0.717
ARID4B	KDM6A	ENSPSIP00000012923	ENSPSIP00000013275	AT-rich interaction domain 4B.	Uncharacterized protein.	0.717
ARID4B	LOC102450092	ENSPSIP00000012923	ENSPSIP00000001575	AT-rich interaction domain 4B.	Histone H4.	0.744
ARID4B	MYSM1	ENSPSIP00000012923	ENSPSIP00000004076	AT-rich interaction domain 4B.	Myb like, SWIRM and MPN domains 1.	0.591
HAT1	KAT2B	ENSPSIP00000015233	ENSPSIP00000009860	Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.	Lysine acetyltransferase 2B.	0.563
HAT1	LOC102450092	ENSPSIP00000015233	ENSPSIP00000001575	Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.	Histone H4.	0.688
K7FUK6_PELSI	ARID4A	ENSPSIP00000011716	ENSPSIP00000016834	JmjC domain-containing protein.	AT-rich interaction domain 4A.	0.717
K7FUK6_PELSI	ARID4B	ENSPSIP00000011716	ENSPSIP00000012923	JmjC domain-containing protein.	AT-rich interaction domain 4B.	0.717
K7FUK6_PELSI	KDM6A	ENSPSIP00000011716	ENSPSIP00000013275	JmjC domain-containing protein.	Uncharacterized protein.	0.635
K7FUK6_PELSI	KMT2C	ENSPSIP00000011716	ENSPSIP00000020005	JmjC domain-containing protein.	Lysine methyltransferase 2C.	0.909
K7FUK6_PELSI	KMT5A	ENSPSIP00000011716	ENSPSIP00000010443	JmjC domain-containing protein.	SET domain-containing protein.	0.502
K7FUK6_PELSI	LOC102450092	ENSPSIP00000011716	ENSPSIP00000001575	JmjC domain-containing protein.	Histone H4.	0.625
K7FUK6_PELSI	MYSM1	ENSPSIP00000011716	ENSPSIP00000004076	JmjC domain-containing protein.	Myb like, SWIRM and MPN domains 1.	0.486