Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF186Ring finger protein 186. (227 aa)    
Predicted Functional Partners:
RNF182
Ring finger protein 182.
      
 0.668
RNF150
Ring finger protein 150.
      
 0.668
RNF183
Ring finger protein 183.
    
 
 0.629
PLA2G2E
Phospholipase A(2).
      
 0.600
OTOP3
Otopetrin 3.
      
 0.599
OTUD3
OTU deubiquitinase 3.
      
 0.576
RNF121
Ring finger protein 121.
      
 0.552
SVOPL
SVOP like.
      
 0.548
PUS10
Pseudouridine synthase 10.
      
 0.543
UBE2H
Ubiquitin conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.531
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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