Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
COA4Cytochrome c oxidase assembly factor 4 homolog. (84 aa)    
Predicted Functional Partners:
SSBP1
Single stranded DNA binding protein 1.
   
 
 0.783
CMC2
COX assembly mitochondrial protein.
   
 
 0.713
SMIM20
Small integral membrane protein 20.
   
  
 0.665
MSH6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 
 0.645
LYRM7
LYR motif containing 7; Belongs to the complex I LYR family.
   
  
 0.643
COA6
Cytochrome c oxidase assembly factor 6.
   
 
 0.631
CMC4
C-X9-C motif containing 4.
    
 0.627
ZDHHC4
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.604
K7FB36_PELSI
CHCH domain-containing protein.
   
 
 0.586
SDHAF4
Succinate dehydrogenase complex assembly factor 4.
      
 0.549
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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