Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARHGEF18Uncharacterized protein. (836 aa)    
Predicted Functional Partners:
RHOA
Uncharacterized protein.
   
 0.963
CGN
Uncharacterized protein.
     
 0.954
LOC102458580
Uncharacterized protein.
   
 0.930
EPB41L4B
Erythrocyte membrane protein band 4.1 like 4B.
     
 0.915
PATJ
Uncharacterized protein.
   
 0.913
STK11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
     
  0.900
AKAP13
A-kinase anchoring protein 13.
   
 
 0.715
RHOC
Uncharacterized protein.
   
 0.650
RHOB
Ras homolog family member B.
   
 0.650
BCR
BCR activator of RhoGEF and GTPase.
     
 0.630
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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