Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXA1Homeobox A1. (326 aa)    
Predicted Functional Partners:
PBX4
PBX homeobox 4.
    
 0.703
PBX3
PBX homeobox 3.
    
 0.703
PBX1
PBX homeobox 1.
    
 0.703
K7EXR0_PELSI
Uncharacterized protein.
    
   0.475
SPRY1
Sprouty RTK signaling antagonist 1.
    
   0.464
NR6A1
Nuclear receptor subfamily 6 group A member 1.
    
 0.440
LNPK
Lunapark, ER junction formation factor.
      
 0.410
GDAP1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
      
 0.403
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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