Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
K7F469_PELSIRhomboid domain-containing protein. (179 aa)    
Predicted Functional Partners:
RHBDF2
Uncharacterized protein.
 
     0.914
ADAM17
ADAM metallopeptidase domain 17.
    
 0.821
PHLDB1
Pleckstrin homology like domain family B member 1.
   
  
 0.551
D2HGDH
D-2-hydroxyglutarate dehydrogenase.
      
 0.537
ETFA
Electron transfer flavoprotein subunit alpha.
     
 0.532
K7FQJ4_PELSI
Peptidase M12B domain-containing protein.
    
 0.529
LCMT1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
      
 0.509
LMF1
Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.
      
 0.509
NPRL3
NPR3 like, GATOR1 complex subunit.
      
 0.509
ADAM10
ADAM metallopeptidase domain 10.
    
 0.463
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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