STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102448240Rab-GAP TBC domain-containing protein. (230 aa)    
Predicted Functional Partners:
TBC1D22A
Uncharacterized protein.
 
      0.728
ACBD3
Acyl-CoA binding domain containing 3.
    
 
 0.614
MRPS6
Mitochondrial ribosomal protein S6.
    
   0.541
TRABD
TraB domain containing.
      
 0.474
RAB1A
RAB1A, member RAS oncogene family.
    
 
 0.473
LOC102458629
Uncharacterized protein.
    
 
 0.473
MRPS35
Mitochondrial ribosomal protein S35.
    
   0.455
USP32
Uncharacterized protein; Belongs to the peptidase C19 family.
    
 
 0.452
FBXO25
F-box protein 25.
      
 0.441
CIAO2B
Cytosolic iron-sulfur assembly component 2B.
 
      0.441
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.