STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCP1ADecapping mRNA 1A. (611 aa)    
Predicted Functional Partners:
DCP2
Decapping mRNA 2.
    
 0.965
XRN1
5'-3' exoribonuclease 1.
    
 0.962
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
   
 0.961
EDC4
Enhancer of mRNA decapping 4.
    
 0.960
EDC3
Enhancer of mRNA decapping 3.
   
 0.958
DCP1B
Decapping mRNA 1B.
  
  
 
0.907
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.827
PNRC2
Proline rich nuclear receptor coactivator 2.
    
 0.827
PATL2
PAT1 homolog 2.
    
 0.827
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.825
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.