TRIP13 protein (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRIP13

Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family. (432 aa)

Predicted Functional Partners:

UBXN7

0.940

MAD2L1BP

0.939

MAD2L1

0.925

EXO1

0.811

MELK

0.810

DMC1

0.808

CDC20

0.771

CDC20B

0.771

MAD2L2

0.754

K7GI78_PELSI

0.754

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC20	EXO1	ENSPSIP00000008549	ENSPSIP00000014140	Cell division cycle 20.	Exonuclease 1.	0.434
CDC20	MAD2L1	ENSPSIP00000008549	ENSPSIP00000014901	Cell division cycle 20.	Mitotic arrest deficient 2 like 1.	0.968
CDC20	MAD2L1BP	ENSPSIP00000008549	ENSPSIP00000001103	Cell division cycle 20.	MAD2L1 binding protein.	0.722
CDC20	MELK	ENSPSIP00000008549	ENSPSIP00000008556	Cell division cycle 20.	Non-specific serine/threonine protein kinase.	0.688
CDC20	TRIP13	ENSPSIP00000008549	ENSPSIP00000003453	Cell division cycle 20.	Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family.	0.771
CDC20B	EXO1	ENSPSIP00000010334	ENSPSIP00000014140	Cell division cycle 20B.	Exonuclease 1.	0.434
CDC20B	MAD2L1	ENSPSIP00000010334	ENSPSIP00000014901	Cell division cycle 20B.	Mitotic arrest deficient 2 like 1.	0.952
CDC20B	MAD2L1BP	ENSPSIP00000010334	ENSPSIP00000001103	Cell division cycle 20B.	MAD2L1 binding protein.	0.722
CDC20B	MELK	ENSPSIP00000010334	ENSPSIP00000008556	Cell division cycle 20B.	Non-specific serine/threonine protein kinase.	0.688
CDC20B	TRIP13	ENSPSIP00000010334	ENSPSIP00000003453	Cell division cycle 20B.	Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family.	0.771
DMC1	EXO1	ENSPSIP00000004446	ENSPSIP00000014140	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	Exonuclease 1.	0.734
DMC1	MAD2L1	ENSPSIP00000004446	ENSPSIP00000014901	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	Mitotic arrest deficient 2 like 1.	0.529
DMC1	TRIP13	ENSPSIP00000004446	ENSPSIP00000003453	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family.	0.808
EXO1	CDC20	ENSPSIP00000014140	ENSPSIP00000008549	Exonuclease 1.	Cell division cycle 20.	0.434
EXO1	CDC20B	ENSPSIP00000014140	ENSPSIP00000010334	Exonuclease 1.	Cell division cycle 20B.	0.434
EXO1	DMC1	ENSPSIP00000014140	ENSPSIP00000004446	Exonuclease 1.	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	0.734
EXO1	K7GI78_PELSI	ENSPSIP00000014140	ENSPSIP00000019989	Exonuclease 1.	HORMA domain-containing protein.	0.540
EXO1	MAD2L1	ENSPSIP00000014140	ENSPSIP00000014901	Exonuclease 1.	Mitotic arrest deficient 2 like 1.	0.541
EXO1	MAD2L2	ENSPSIP00000014140	ENSPSIP00000006509	Exonuclease 1.	HORMA domain-containing protein.	0.540
EXO1	MELK	ENSPSIP00000014140	ENSPSIP00000008556	Exonuclease 1.	Non-specific serine/threonine protein kinase.	0.815