Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC63Coiled-coil domain containing 63. (549 aa)    
Predicted Functional Partners:
ARMC4
Armadillo repeat containing 4.
   
 
 0.852
TTC25
Tetratricopeptide repeat domain 25.
   
 
 0.852
EFCAB1
EF-hand calcium binding domain 1.
    
 
 0.847
RIBC2
RIB43A domain with coiled-coils 2.
   
 
 0.827
TTC29
Tetratricopeptide repeat domain 29.
   
 0.800
CCDC151
Coiled-coil domain containing 151.
   
 0.784
CFAP52
Cilia and flagella associated protein 52.
   
 
 0.775
RSPH4A
Radial spoke head 6 homolog A.
   
 
 0.758
TEKT1
Tektin 1.
   
 
 0.728
DNAI1
Dynein axonemal intermediate chain 1.
   
 
 0.725
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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