STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL8A1Collagen type VIII alpha 1 chain. (739 aa)    
Predicted Functional Partners:
COL6A2
Collagen type VI alpha 2 chain.
  
0.617
SERPINH1
Serpin family H member 1; Belongs to the serpin family.
   
 0.607
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.581
TGFBR1
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.500
COLEC10
Collectin subfamily member 10.
  
 
  0.488
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.476
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.476
PPIB
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.474
COL17A1
Collagen type XVII alpha 1 chain.
     
0.468
P4HA2
Prolyl 4-hydroxylase subunit alpha 2.
    
 0.451
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.