Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPTXRNeuronal pentraxin receptor. (292 aa)    
Predicted Functional Partners:
CBX6
Chromobox 6.
 
      0.787
RNF2
Ring finger protein 2.
    
 0.686
EED
Embryonic ectoderm development.
    
 0.504
BMI1
RING-type domain-containing protein.
    
 0.450
PCGF6
Polycomb group ring finger 6.
    
 0.450
PCGF3
Polycomb group ring finger 3.
    
 0.450
PCGF2
Polycomb group ring finger 2.
    
 0.450
PCGF5
Polycomb group ring finger 5.
    
 0.450
YAF2
YY1 associated factor 2.
    
 0.414
RYBP
RING1 and YY1 binding protein.
    
 0.414
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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