STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3388 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 0.991
SMG9
SMG9 nonsense mediated mRNA decay factor.
    
 0.955
SMG8
Uncharacterized protein.
   
 0.953
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
 0.938
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 
 0.921
K7F8W3_PELSI
SMG1_N domain-containing protein.
 
     0.920
ETF1
Eukaryotic translation termination factor 1.
    
 
 0.903
RICTOR
RPTOR independent companion of MTOR complex 2.
   
 0.898
RPTOR
Regulatory associated protein of MTOR complex 1.
   
 0.898
MLST8
MTOR associated protein, LST8 homolog.
    
 0.891
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.