K7FAZ1_PELSI protein (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K7FAZ1_PELSI

Calponin-homology (CH) domain-containing protein. (710 aa)

Predicted Functional Partners:

K7FAU3_PELSI

0.936

K7FA06_PELSI

0.770

SUN1

0.757

SYNE2

0.753

ITSN2

0.559

ENY2

0.501

K7FP47_PELSI

0.499

SUN3

0.494

TRRAP

0.480

SUN2

0.473

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENY2	K7FA06_PELSI	ENSPSIP00000007545	ENSPSIP00000004866	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Uncharacterized protein.	0.501
ENY2	K7FAU3_PELSI	ENSPSIP00000007545	ENSPSIP00000005153	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Uncharacterized protein.	0.501
ENY2	K7FAZ1_PELSI	ENSPSIP00000007545	ENSPSIP00000005201	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Calponin-homology (CH) domain-containing protein.	0.501
ENY2	SYNE2	ENSPSIP00000007545	ENSPSIP00000020514	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Spectrin repeat containing nuclear envelope protein 2.	0.501
ENY2	TRRAP	ENSPSIP00000007545	ENSPSIP00000004236	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Transformation/transcription domain associated protein.	0.977
ITSN2	K7FA06_PELSI	ENSPSIP00000006722	ENSPSIP00000004866	Intersectin 2.	Uncharacterized protein.	0.559
ITSN2	K7FAU3_PELSI	ENSPSIP00000006722	ENSPSIP00000005153	Intersectin 2.	Uncharacterized protein.	0.559
ITSN2	K7FAZ1_PELSI	ENSPSIP00000006722	ENSPSIP00000005201	Intersectin 2.	Calponin-homology (CH) domain-containing protein.	0.559
ITSN2	SYNE2	ENSPSIP00000006722	ENSPSIP00000020514	Intersectin 2.	Spectrin repeat containing nuclear envelope protein 2.	0.559
K7FA06_PELSI	ENY2	ENSPSIP00000004866	ENSPSIP00000007545	Uncharacterized protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.501
K7FA06_PELSI	ITSN2	ENSPSIP00000004866	ENSPSIP00000006722	Uncharacterized protein.	Intersectin 2.	0.559
K7FA06_PELSI	K7FAU3_PELSI	ENSPSIP00000004866	ENSPSIP00000005153	Uncharacterized protein.	Uncharacterized protein.	0.765
K7FA06_PELSI	K7FAZ1_PELSI	ENSPSIP00000004866	ENSPSIP00000005201	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.770
K7FA06_PELSI	K7FP47_PELSI	ENSPSIP00000004866	ENSPSIP00000009807	Uncharacterized protein.	SUN domain-containing protein.	0.494
K7FA06_PELSI	SUN1	ENSPSIP00000004866	ENSPSIP00000004873	Uncharacterized protein.	Sad1 and UNC84 domain containing 1.	0.494
K7FA06_PELSI	SUN2	ENSPSIP00000004866	ENSPSIP00000004631	Uncharacterized protein.	Sad1 and UNC84 domain containing 2.	0.473
K7FA06_PELSI	SUN3	ENSPSIP00000004866	ENSPSIP00000015687	Uncharacterized protein.	Sad1 and UNC84 domain containing 3.	0.494
K7FA06_PELSI	TRRAP	ENSPSIP00000004866	ENSPSIP00000004236	Uncharacterized protein.	Transformation/transcription domain associated protein.	0.470
K7FAU3_PELSI	ENY2	ENSPSIP00000005153	ENSPSIP00000007545	Uncharacterized protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.501
K7FAU3_PELSI	ITSN2	ENSPSIP00000005153	ENSPSIP00000006722	Uncharacterized protein.	Intersectin 2.	0.559