STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDP2Tyrosyl-DNA phosphodiesterase 2. (289 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-like domain-containing protein.
    
 
 0.760
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.758
TDP1
Tyrosyl-DNA phosphodiesterase 1.
   
  
 0.678
ORC2
Origin recognition complex subunit 2.
      
 0.639
SUMO1
Small ubiquitin-related modifier.
   
 
 0.625
SUMO4
Small ubiquitin-related modifier.
   
 
 0.621
SUMO3
Small ubiquitin-related modifier.
   
 
 0.621
UBC
Uncharacterized protein.
    
 
 0.596
K7EXK2_PELSI
Ubiquitin-like domain-containing protein.
    
   0.592
ACOT13
Acyl-CoA thioesterase 13.
      
 0.564
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.