STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS51VPS51 subunit of GARP complex. (793 aa)    
Predicted Functional Partners:
VPS53
VPS53 subunit of GARP complex.
    
 0.999
VPS54
VPS54 subunit of GARP complex.
   
 0.991
K7FFH9_PELSI
Uncharacterized protein.
   
 0.986
VPS50
VPS50 subunit of EARP/GARPII complex.
    
 0.985
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.945
EIPR1
EARP complex and GARP complex interacting protein 1.
   
 0.920
STX8
Syntaxin 8.
    
 0.871
COG5
Component of oligomeric golgi complex 5.
   
 
 0.837
COG1
Component of oligomeric golgi complex 1.
   
 
 0.832
COG2
Component of oligomeric golgi complex 2.
   
 
 0.831
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.