STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNPS1RNA binding protein with serine rich domain 1. (307 aa)    
Predicted Functional Partners:
SAP18
Sin3A associated protein 18.
   
 0.999
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.997
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
 0.994
PNN
Pinin, desmosome associated protein.
   
 0.992
UPF1
UPF1 RNA helicase and ATPase.
    
 0.988
SRRM1
Serine and arginine repetitive matrix 1.
   
 0.982
ALYREF
Aly/REF export factor.
   
 0.981
K7EXF7_PELSI
Uncharacterized protein.
   
 
  0.951
UBE2I
Ubiquitin conjugating enzyme E2 I; Belongs to the ubiquitin-conjugating enzyme family.
   
   0.933
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.910
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.