STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMBRA1Autophagy and beclin 1 regulator 1. (1301 aa)    
Predicted Functional Partners:
BECN1
Uncharacterized protein.
    
 0.992
ULK1
Unc-51 like autophagy activating kinase 1.
   
 0.975
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.969
ULK2
Unc-51 like autophagy activating kinase 2.
   
 0.968
PRKN
RBR-type E3 ubiquitin transferase.
    
 0.941
PIK3R4
Phosphoinositide-3-kinase regulatory subunit 4.
   
 
 0.861
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
   
 0.852
DDB1
Damage specific DNA binding protein 1.
    
 0.832
ATG13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 0.805
ATG14
Autophagy related 14.
     
 0.800
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.