STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS54VPS54 subunit of GARP complex. (988 aa)    
Predicted Functional Partners:
K7FFH9_PELSI
Uncharacterized protein.
    
 0.998
VPS53
VPS53 subunit of GARP complex.
   
 0.998
VPS51
VPS51 subunit of GARP complex.
   
 0.991
STX16
t-SNARE coiled-coil homology domain-containing protein.
    
 0.897
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.888
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.876
COG4
Component of oligomeric golgi complex 4.
    
 0.866
COG8
Uncharacterized protein.
    
 0.865
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.864
COG3
Component of oligomeric golgi complex 3.
     
 0.863
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.