STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS78884.1Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)    
Predicted Functional Partners:
ALS78885.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.880
ALS77498.1
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.862
ALS78409.1
Endonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.746
ALS78886.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
ALS78957.1
single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.577
ALS78959.1
Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.577
ALS77738.1
uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.573
ALS78882.1
Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.569
ALS78881.1
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.537
ALS78875.1
Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.524
Your Current Organism:
Planococcus kocurii
NCBI taxonomy Id: 1374
Other names: AJ 3345, ATCC 43650, DSM 20747, IAM 12847, IFO 15850, JCM 2569, LMG 17320, LMG:17320, NBRC 15850, NCIMB 629, P. kocurii, strain HK 701
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.