STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS78973.150S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)    
Predicted Functional Partners:
ALS78975.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
ALS77185.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
rpsP
30S ribosomal protein S16; Binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
ALS80068.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
ALS80074.1
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.997
ALS78276.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
ALS78295.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
ALS79101.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
ALS80069.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
ALS80101.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
Your Current Organism:
Planococcus kocurii
NCBI taxonomy Id: 1374
Other names: AJ 3345, ATCC 43650, DSM 20747, IAM 12847, IFO 15850, JCM 2569, LMG 17320, LMG:17320, NBRC 15850, NCIMB 629, P. kocurii, strain HK 701
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