STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsLCell division protein FtsL; Essential cell division protein; Belongs to the FtsL family. (123 aa)    
Predicted Functional Partners:
rsmH
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
  
 0.914
pbpB
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.886
mraZ
Division/cell wall cluster transcriptional repressor MraZ; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family.
  
    0.726
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
  
 0.692
divIC
Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.579
divIB
Cell division protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
     
 0.570
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.560
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
  
  
 0.498
ALI32984.1
Competence protein ComGC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.497
rpmF
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.
 
     0.486
Your Current Organism:
Weissella cibaria
NCBI taxonomy Id: 137591
Other names: CCUG 41967, DSM 14295 [[Weissella kimchii]], JCM 12495, KACC 11862, KCCM 41287 [[Weissella kimchii]], KCTC 3746 [[Weissella kimchii]], LMG 17699, LMG:17699, W. cibaria, Weissella cibaria Bjorkroth et al. 2002, Weissella kimchii, Weissella kimchii Choi et al. 2002, strain CHJ3 [[Weissella kimchii]]
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