STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msrA_2Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (176 aa)    
Predicted Functional Partners:
msrB
Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.953
ALI34056.1
Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.953
ydbP
Thiol-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.839
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.805
metQ_3
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.
       0.729
nrdH
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.667
ytlR
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
mprF
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
     
 0.447
Your Current Organism:
Weissella cibaria
NCBI taxonomy Id: 137591
Other names: CCUG 41967, DSM 14295 [[Weissella kimchii]], JCM 12495, KACC 11862, KCCM 41287 [[Weissella kimchii]], KCTC 3746 [[Weissella kimchii]], LMG 17699, LMG:17699, W. cibaria, Weissella cibaria Bjorkroth et al. 2002, Weissella kimchii, Weissella kimchii Choi et al. 2002, strain CHJ3 [[Weissella kimchii]]
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