STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garB_3Glutathione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)    
Predicted Functional Partners:
ydbP
Thiol-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.646
ALI33475.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.478
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.462
atpG
ATP synthase F0F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
 
 0.458
ALI32645.1
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.458
trxA
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.
  
 
 0.444
ALI33476.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.413
Your Current Organism:
Weissella cibaria
NCBI taxonomy Id: 137591
Other names: CCUG 41967, DSM 14295 [[Weissella kimchii]], JCM 12495, KACC 11862, KCCM 41287 [[Weissella kimchii]], KCTC 3746 [[Weissella kimchii]], LMG 17699, LMG:17699, W. cibaria, Weissella cibaria Bjorkroth et al. 2002, Weissella kimchii, Weissella kimchii Choi et al. 2002, strain CHJ3 [[Weissella kimchii]]
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