STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ideRIron-dependent repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)    
Predicted Functional Partners:
metN
Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.620
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.560
psaA_1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.540
ssaB
Manganese ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.540
psaA_2
Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.540
adcC_1
Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.525
rpoD
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
  
 0.520
adcC_2
Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.519
czcD
Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.514
copB_2
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.513
Your Current Organism:
Weissella cibaria
NCBI taxonomy Id: 137591
Other names: CCUG 41967, DSM 14295 [[Weissella kimchii]], JCM 12495, KACC 11862, KCCM 41287 [[Weissella kimchii]], KCTC 3746 [[Weissella kimchii]], LMG 17699, LMG:17699, W. cibaria, Weissella cibaria Bjorkroth et al. 2002, Weissella kimchii, Weissella kimchii Choi et al. 2002, strain CHJ3 [[Weissella kimchii]]
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