STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ57496.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
SDJ86786.1
Hypothetical protein.
 
     0.761
SDJ86744.1
Long-chain fatty acid transport protein.
  
     0.760
SDK73913.1
Hypothetical protein.
  
     0.751
lifO-2
Lipase chaperone LimK; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.740
SDJ71415.1
Hypothetical protein.
  
     0.684
SDK64335.1
Pentapeptide repeat-containing protein.
  
     0.679
SDK65795.1
Hypothetical protein.
  
     0.673
SDK86741.1
Hypothetical protein.
  
     0.666
lifO
Lipase chaperone LimK; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.663
SDJ86832.1
Hypothetical protein.
  
     0.652
Your Current Organism:
Pseudomonas indica
NCBI taxonomy Id: 137658
Other names: DSM 14015, JCM 21544, LMG 23066, LMG:23066, MTCC 3713, NBRC 103045, P. indica, Pseudomonas indica Pandey et al. 2002, Pseudomonas sp. IMT37, Pseudomonas sp. IMT40, strain IMT37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.