STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ75260.1Hypothetical protein. (118 aa)    
Predicted Functional Partners:
SDL39728.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.939
SDL39770.1
PAS domain S-box-containing protein.
  
 0.852
SDL83953.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
  
 0.847
SDL99046.1
Polar amino acid transport system substrate-binding protein.
  
 0.843
SDL25061.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
 
 0.837
SDJ92901.1
Hypothetical protein.
   
 0.834
SDL48038.1
Na+/proline symporter.
  
 0.828
SDK58562.1
Flagellar biosynthesis protein FlhG.
  
 0.814
SDK19297.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.812
SDJ70616.1
Two-component system, NarL family, sensor histidine kinase BarA.
  
 0.802
Your Current Organism:
Pseudomonas indica
NCBI taxonomy Id: 137658
Other names: DSM 14015, JCM 21544, LMG 23066, LMG:23066, MTCC 3713, NBRC 103045, P. indica, Pseudomonas indica Pandey et al. 2002, Pseudomonas sp. IMT37, Pseudomonas sp. IMT40, strain IMT37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.