STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ83898.1Glycerol transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (365 aa)    
Predicted Functional Partners:
SDJ83849.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.995
SDJ83802.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.994
SDJ83703.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
 0.987
SDL93293.1
Maltooligosaccharide ABC transporter membrane protein.
 
 0.973
SDL93196.1
Maltose/maltodextrin transport system substrate-binding protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins. Belongs to the bacterial solute-binding protein 1 family.
  
 0.969
SDK24190.1
Sorbitol/mannitol transport system permease protein.
 
 0.955
SDK24153.1
Sorbitol/mannitol transport system permease protein.
 
 0.952
SDJ83752.1
Predicted small integral membrane protein.
 
    0.948
SDK94858.1
Trehalose/maltose transport system permease protein.
 
 0.945
SDK94900.1
Trehalose/maltose transport system permease protein.
 0.943
Your Current Organism:
Pseudomonas indica
NCBI taxonomy Id: 137658
Other names: DSM 14015, JCM 21544, LMG 23066, LMG:23066, MTCC 3713, NBRC 103045, P. indica, Pseudomonas indica Pandey et al. 2002, Pseudomonas sp. IMT37, Pseudomonas sp. IMT40, strain IMT37
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