STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK67534.1Protein of unknown function. (168 aa)    
Predicted Functional Partners:
SDK67463.1
Hypothetical protein.
 
   
 0.958
SDK67495.1
Site-specific DNA recombinase.
 
     0.952
SDK67645.1
Protein of unknown function.
 
     0.875
SDK67677.1
Transcriptional regulator, contains XRE-family HTH domain.
 
   
 0.867
SDK68060.1
AAA domain-containing protein.
 
   
 0.863
SDK68205.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.860
SDK68236.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.858
SDK67781.1
Hypothetical protein.
 
   
 0.842
SDK67710.1
Hypothetical protein.
 
     0.836
SDK68620.1
Bacteriophage lambda head decoration protein D.
  
    0.836
Your Current Organism:
Pseudomonas indica
NCBI taxonomy Id: 137658
Other names: DSM 14015, JCM 21544, LMG 23066, LMG:23066, MTCC 3713, NBRC 103045, P. indica, Pseudomonas indica Pandey et al. 2002, Pseudomonas sp. IMT37, Pseudomonas sp. IMT40, strain IMT37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.