STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL13356.1sigma-E factor negative regulatory protein RseA. (194 aa)    
Predicted Functional Partners:
SDL13312.1
Sigma E regulatory protein, MucB/RseB.
 
 
 0.999
SDL13396.1
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.996
SDL13224.1
Serine protease Do; Belongs to the peptidase S1C family.
  
 
 0.985
SDJ85427.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.976
SDK07096.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.973
SDL52004.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.968
SDK57126.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.963
SDK24927.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.959
SDK87197.1
Serine protease DegS.
  
 
 0.954
SDK68318.1
Protein of unknown function.
  
 
 0.951
Your Current Organism:
Pseudomonas indica
NCBI taxonomy Id: 137658
Other names: DSM 14015, JCM 21544, LMG 23066, LMG:23066, MTCC 3713, NBRC 103045, P. indica, Pseudomonas indica Pandey et al. 2002, Pseudomonas sp. IMT37, Pseudomonas sp. IMT40, strain IMT37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.