Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK88108.1 | SDK88213.1 | SAMN05216186_111122 | SAMN05216186_111125 | TIGR02099 family protein. | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | 0.828 |
SDK88108.1 | SDL13579.1 | SAMN05216186_111122 | SAMN05216186_11573 | TIGR02099 family protein. | Hypothetical protein. | 0.519 |
SDK88213.1 | SDK88108.1 | SAMN05216186_111125 | SAMN05216186_111122 | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | TIGR02099 family protein. | 0.828 |
SDK88213.1 | SDL13579.1 | SAMN05216186_111125 | SAMN05216186_11573 | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | Hypothetical protein. | 0.603 |
SDK88213.1 | SDL28548.1 | SAMN05216186_111125 | SAMN05216186_117107 | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | Fe-S cluster biosynthesis and repair protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.525 |
SDL13476.1 | SDL13527.1 | SAMN05216186_11571 | SAMN05216186_11572 | Toxin CptA. | Antitoxin CptB. | 0.803 |
SDL13476.1 | SDL13579.1 | SAMN05216186_11571 | SAMN05216186_11573 | Toxin CptA. | Hypothetical protein. | 0.599 |
SDL13476.1 | SDL13635.1 | SAMN05216186_11571 | SAMN05216186_11574 | Toxin CptA. | HD-like signal output (HDOD) domain, no enzymatic activity. | 0.481 |
SDL13527.1 | SDL13476.1 | SAMN05216186_11572 | SAMN05216186_11571 | Antitoxin CptB. | Toxin CptA. | 0.803 |
SDL13527.1 | SDL13579.1 | SAMN05216186_11572 | SAMN05216186_11573 | Antitoxin CptB. | Hypothetical protein. | 0.599 |
SDL13527.1 | SDL13635.1 | SAMN05216186_11572 | SAMN05216186_11574 | Antitoxin CptB. | HD-like signal output (HDOD) domain, no enzymatic activity. | 0.501 |
SDL13527.1 | nfuA | SAMN05216186_11572 | SAMN05216186_13336 | Antitoxin CptB. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.646 |
SDL13579.1 | SDK88108.1 | SAMN05216186_11573 | SAMN05216186_111122 | Hypothetical protein. | TIGR02099 family protein. | 0.519 |
SDL13579.1 | SDK88213.1 | SAMN05216186_11573 | SAMN05216186_111125 | Hypothetical protein. | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | 0.603 |
SDL13579.1 | SDL13476.1 | SAMN05216186_11573 | SAMN05216186_11571 | Hypothetical protein. | Toxin CptA. | 0.599 |
SDL13579.1 | SDL13527.1 | SAMN05216186_11573 | SAMN05216186_11572 | Hypothetical protein. | Antitoxin CptB. | 0.599 |
SDL13579.1 | SDL13635.1 | SAMN05216186_11573 | SAMN05216186_11574 | Hypothetical protein. | HD-like signal output (HDOD) domain, no enzymatic activity. | 0.617 |
SDL13579.1 | SDL28548.1 | SAMN05216186_11573 | SAMN05216186_117107 | Hypothetical protein. | Fe-S cluster biosynthesis and repair protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.535 |
SDL13579.1 | SDL36486.1 | SAMN05216186_11573 | SAMN05216186_11947 | Hypothetical protein. | Iron-binding apoprotein IscA; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family. | 0.739 |
SDL13579.1 | cyaY | SAMN05216186_11573 | SAMN05216186_101380 | Hypothetical protein. | CyaY protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.579 |
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