STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL57798.1Predicted phosphoribosyltransferase. (222 aa)    
Predicted Functional Partners:
SDL57830.1
Erythromycin esterase homolog.
     0.982
SDJ39891.1
Dienelactone hydrolase.
     0.979
SDK43420.1
Hypothetical protein.
 
  
 0.736
SDK64298.1
Hypothetical protein.
  
  
 0.699
SDK43257.1
Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein).
 
    0.633
SDK43454.1
HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
 
  
 0.550
SDL57903.1
Hypothetical protein.
       0.498
SDL71276.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.455
Your Current Organism:
Pseudomonas indica
NCBI taxonomy Id: 137658
Other names: DSM 14015, JCM 21544, LMG 23066, LMG:23066, MTCC 3713, NBRC 103045, P. indica, Pseudomonas indica Pandey et al. 2002, Pseudomonas sp. IMT37, Pseudomonas sp. IMT40, strain IMT37
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.