STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL67101.1Alginate lyase. (223 aa)    
Predicted Functional Partners:
SDK54378.1
poly(beta-D-mannuronate) C5 epimerase.
 
 
 0.800
SDJ95499.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
 
 
 0.793
SDJ95542.1
VCBS repeat-containing protein.
 
 
 0.769
SDK92325.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.766
SDJ31122.1
Hypothetical protein.
  
     0.742
SDL58612.1
Hypothetical protein.
  
  
  0.727
SDK69104.1
Phage conserved hypothetical protein BR0599.
   
   0.709
algL
poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
  
   
 0.690
SDK54338.1
Alginate biosynthesis protein AlgX.
 
  
 0.689
SDL91655.1
Catalase.
  
  
 0.655
Your Current Organism:
Pseudomonas indica
NCBI taxonomy Id: 137658
Other names: DSM 14015, JCM 21544, LMG 23066, LMG:23066, MTCC 3713, NBRC 103045, P. indica, Pseudomonas indica Pandey et al. 2002, Pseudomonas sp. IMT37, Pseudomonas sp. IMT40, strain IMT37
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