STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywqECapsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
ywqD_2
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.964
ywqD_1
Capsular biosynthesis protein; Frameshifted; internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.947
cap8A_2
Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.940
cap8A_1
Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
capD
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.641
mutX
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
AMC01502.1
EDD domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
prkC
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.436
AMC01103.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.414
Your Current Organism:
Aerococcus viridans
NCBI taxonomy Id: 1377
Other names: A. viridans, ATCC 11563, CCUG 4311, CIP 54.145, DSM 20340, Gaffkya homari, IAM 13649, IFO 12219, JCM 20461, LMG 17931, LMG:17931, NBRC 12219, NCAIM B.01070, NCTC 8251, Pediococcus homari
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.