STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMC01626.1Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)    
Predicted Functional Partners:
AWM76_08710
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.900
copA_3
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.868
AMC01599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.521
copA_2
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
0.521
AMC00158.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.513
zosA_3
Metal-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.513
zosA_2
Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.513
copB
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.513
AMC01617.1
Metal-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.513
copY_2
CopY family transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.467
Your Current Organism:
Aerococcus viridans
NCBI taxonomy Id: 1377
Other names: A. viridans, ATCC 11563, CCUG 4311, CIP 54.145, DSM 20340, Gaffkya homari, IAM 13649, IFO 12219, JCM 20461, LMG 17931, LMG:17931, NBRC 12219, NCAIM B.01070, NCTC 8251, Pediococcus homari
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.