Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AZL_004530 | AZL_008250 | AZL_004530 | AZL_008250 | Thiamine biosynthesis. | Hypothetical protein. | 0.531 |
AZL_004530 | AZL_014400 | AZL_004530 | AZL_014400 | Thiamine biosynthesis. | Hypothetical protein. | 0.568 |
AZL_004530 | cysN | AZL_004530 | AZL_009320 | Thiamine biosynthesis. | Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family. | 0.535 |
AZL_004530 | mesJ | AZL_004530 | AZL_009870 | Thiamine biosynthesis. | Cell cycle protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.697 |
AZL_004530 | moeB | AZL_004530 | AZL_003700 | Thiamine biosynthesis. | Molybdopterin biosynthesis protein. | 0.875 |
AZL_004530 | moeB-2 | AZL_004530 | AZL_022680 | Thiamine biosynthesis. | Molybdopterin biosynthesis protein. | 0.923 |
AZL_004530 | thiC | AZL_004530 | AZL_005290 | Thiamine biosynthesis. | Thiamine biosynthesis protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.831 |
AZL_004530 | thiE | AZL_004530 | AZL_009640 | Thiamine biosynthesis. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.839 |
AZL_004530 | thiG | AZL_004530 | AZL_004540 | Thiamine biosynthesis. | Thiamine biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.996 |
AZL_004530 | thiO | AZL_004530 | AZL_004520 | Thiamine biosynthesis. | Glycine oxidase. | 0.955 |
AZL_008250 | AZL_004530 | AZL_008250 | AZL_004530 | Hypothetical protein. | Thiamine biosynthesis. | 0.531 |
AZL_008250 | AZL_014400 | AZL_008250 | AZL_014400 | Hypothetical protein. | Hypothetical protein. | 0.423 |
AZL_014400 | AZL_004530 | AZL_014400 | AZL_004530 | Hypothetical protein. | Thiamine biosynthesis. | 0.568 |
AZL_014400 | AZL_008250 | AZL_014400 | AZL_008250 | Hypothetical protein. | Hypothetical protein. | 0.423 |
cysN | AZL_004530 | AZL_009320 | AZL_004530 | Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family. | Thiamine biosynthesis. | 0.535 |
cysN | moeB | AZL_009320 | AZL_003700 | Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family. | Molybdopterin biosynthesis protein. | 0.490 |
cysN | moeB-2 | AZL_009320 | AZL_022680 | Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family. | Molybdopterin biosynthesis protein. | 0.673 |
mesJ | AZL_004530 | AZL_009870 | AZL_004530 | Cell cycle protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | Thiamine biosynthesis. | 0.697 |
mesJ | moeB-2 | AZL_009870 | AZL_022680 | Cell cycle protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | Molybdopterin biosynthesis protein. | 0.663 |
moeB | AZL_004530 | AZL_003700 | AZL_004530 | Molybdopterin biosynthesis protein. | Thiamine biosynthesis. | 0.875 |
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