Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEQ76330.1 | SEQ76367.1 | SAMN05421767_10646 | SAMN05421767_10647 | Hypothetical protein. | Superfamily II DNA or RNA helicase. | 0.950 |
SEQ76330.1 | SEQ76442.1 | SAMN05421767_10646 | SAMN05421767_10649 | Hypothetical protein. | AAA domain-containing protein. | 0.915 |
SEQ76367.1 | SEQ76330.1 | SAMN05421767_10647 | SAMN05421767_10646 | Superfamily II DNA or RNA helicase. | Hypothetical protein. | 0.950 |
SEQ76367.1 | SEQ76442.1 | SAMN05421767_10647 | SAMN05421767_10649 | Superfamily II DNA or RNA helicase. | AAA domain-containing protein. | 0.917 |
SEQ76367.1 | SEQ98676.1 | SAMN05421767_10647 | SAMN05421767_1142 | Superfamily II DNA or RNA helicase. | Histidine triad (HIT) family protein. | 0.770 |
SEQ76367.1 | dinG | SAMN05421767_10647 | SAMN05421767_11119 | Superfamily II DNA or RNA helicase. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.999 |
SEQ76367.1 | polA | SAMN05421767_10647 | SAMN05421767_10348 | Superfamily II DNA or RNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.987 |
SEQ76367.1 | rplF | SAMN05421767_10647 | SAMN05421767_10821 | Superfamily II DNA or RNA helicase. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.745 |
SEQ76367.1 | rpoA | SAMN05421767_10647 | SAMN05421767_10810 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
SEQ76367.1 | rpoB | SAMN05421767_10647 | SAMN05421767_11015 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
SEQ76367.1 | rpoC | SAMN05421767_10647 | SAMN05421767_11014 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.954 |
SEQ76367.1 | rpoZ | SAMN05421767_10647 | SAMN05421767_11525 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.996 |
SEQ76442.1 | SEQ76330.1 | SAMN05421767_10649 | SAMN05421767_10646 | AAA domain-containing protein. | Hypothetical protein. | 0.915 |
SEQ76442.1 | SEQ76367.1 | SAMN05421767_10649 | SAMN05421767_10647 | AAA domain-containing protein. | Superfamily II DNA or RNA helicase. | 0.917 |
SEQ98676.1 | SEQ76367.1 | SAMN05421767_1142 | SAMN05421767_10647 | Histidine triad (HIT) family protein. | Superfamily II DNA or RNA helicase. | 0.770 |
SEQ98676.1 | dinG | SAMN05421767_1142 | SAMN05421767_11119 | Histidine triad (HIT) family protein. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.462 |
SEQ98676.1 | rpoA | SAMN05421767_1142 | SAMN05421767_10810 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.677 |
SEQ98676.1 | rpoB | SAMN05421767_1142 | SAMN05421767_11015 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.616 |
SEQ98676.1 | rpoC | SAMN05421767_1142 | SAMN05421767_11014 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.692 |
SEQ98676.1 | rpoZ | SAMN05421767_1142 | SAMN05421767_11525 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.610 |
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