SER21890.1 protein (Granulicatella balaenopterae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SER21890.1

5-bromo-4-chloroindolyl phosphate hydrolysis protein. (318 aa)

Predicted Functional Partners:

SER21926.1

0.984

SER14605.1

0.811

SEQ87682.1

0.798

SEQ95017.1

0.705

SEQ65395.1

0.703

SEQ92347.1

0.671

SER20622.1

0.664

SER14643.1

0.660

SER20048.1

0.623

SEQ65552.1

0.610

Your Current Organism:

Granulicatella balaenopterae

NCBI taxonomy Id: 137733
Other names: ATCC 700813, Abiotrophia balaenopterae, CCUG 37380, CIP 105938, DSM 15827, G. balaenopterae, strain M1975/96/1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEQ65395.1	SEQ87682.1	SAMN05421767_10352	SAMN05421767_10943	Nucleoside 2-deoxyribosyltransferase.	Putative adhesin.	0.671
SEQ65395.1	SER14605.1	SAMN05421767_10352	SAMN05421767_12130	Nucleoside 2-deoxyribosyltransferase.	Predicted membrane protein.	0.671
SEQ65395.1	SER21890.1	SAMN05421767_10352	SAMN05421767_12625	Nucleoside 2-deoxyribosyltransferase.	5-bromo-4-chloroindolyl phosphate hydrolysis protein.	0.703
SEQ65552.1	SEQ87682.1	SAMN05421767_10356	SAMN05421767_10943	LysM repeat-containing protein.	Putative adhesin.	0.830
SEQ65552.1	SEQ92347.1	SAMN05421767_10356	SAMN05421767_11120	LysM repeat-containing protein.	Uncharacterized protein YpmB.	0.649
SEQ65552.1	SER20048.1	SAMN05421767_10356	SAMN05421767_1257	LysM repeat-containing protein.	Two-component signal transduction system YycFG, regulatory protein YycH.	0.656
SEQ65552.1	SER20622.1	SAMN05421767_10356	SAMN05421767_12529	LysM repeat-containing protein.	Uncharacterized membrane-anchored protein.	0.414
SEQ65552.1	SER21890.1	SAMN05421767_10356	SAMN05421767_12625	LysM repeat-containing protein.	5-bromo-4-chloroindolyl phosphate hydrolysis protein.	0.610
SEQ87682.1	SEQ65395.1	SAMN05421767_10943	SAMN05421767_10352	Putative adhesin.	Nucleoside 2-deoxyribosyltransferase.	0.671
SEQ87682.1	SEQ65552.1	SAMN05421767_10943	SAMN05421767_10356	Putative adhesin.	LysM repeat-containing protein.	0.830
SEQ87682.1	SEQ92347.1	SAMN05421767_10943	SAMN05421767_11120	Putative adhesin.	Uncharacterized protein YpmB.	0.470
SEQ87682.1	SEQ95017.1	SAMN05421767_10943	SAMN05421767_11212	Putative adhesin.	Predicted transcriptional regulator containing CBS domains.	0.735
SEQ87682.1	SER14605.1	SAMN05421767_10943	SAMN05421767_12130	Putative adhesin.	Predicted membrane protein.	0.940
SEQ87682.1	SER14643.1	SAMN05421767_10943	SAMN05421767_12131	Putative adhesin.	Two-component system, NarL family, sensor histidine kinase LiaS.	0.899
SEQ87682.1	SER21890.1	SAMN05421767_10943	SAMN05421767_12625	Putative adhesin.	5-bromo-4-chloroindolyl phosphate hydrolysis protein.	0.798
SEQ87682.1	SER21926.1	SAMN05421767_10943	SAMN05421767_12626	Putative adhesin.	Uncharacterized conserved protein YaaN involved in tellurite resistance; Belongs to the TelA family.	0.767
SEQ92347.1	SEQ65552.1	SAMN05421767_11120	SAMN05421767_10356	Uncharacterized protein YpmB.	LysM repeat-containing protein.	0.649
SEQ92347.1	SEQ87682.1	SAMN05421767_11120	SAMN05421767_10943	Uncharacterized protein YpmB.	Putative adhesin.	0.470
SEQ92347.1	SER20048.1	SAMN05421767_11120	SAMN05421767_1257	Uncharacterized protein YpmB.	Two-component signal transduction system YycFG, regulatory protein YycH.	0.730
SEQ92347.1	SER20622.1	SAMN05421767_11120	SAMN05421767_12529	Uncharacterized protein YpmB.	Uncharacterized membrane-anchored protein.	0.734