STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER29917.1Competence protein ComFA. (503 aa)    
Predicted Functional Partners:
SER29890.1
Competence protein ComFC.
 
  
 0.947
SER00021.1
Competence protein ComEA.
   
  
 0.762
SER05860.1
Competence protein ComGC.
 
  
 0.757
SER01422.1
Type IV pilus assembly protein PilB.
   
  
 0.714
SER05790.1
Competence protein ComGA.
   
  
 0.714
SER05828.1
Competence protein ComGB.
   
  
 0.694
SER01356.1
Type II secretion system protein F (GspF).
   
  
 0.685
SEQ65043.1
Replicative DNA helicase loader DnaI.
  
     0.640
SER00069.1
ComEC/Rec2-related protein.
  
  
 0.631
SEQ77660.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
   
  
 0.613
Your Current Organism:
Granulicatella balaenopterae
NCBI taxonomy Id: 137733
Other names: ATCC 700813, Abiotrophia balaenopterae, CCUG 37380, CIP 105938, DSM 15827, G. balaenopterae, strain M1975/96/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.