SER39388.1 protein (Granulicatella balaenopterae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SER39388.1

Sortase B. (226 aa)

Predicted Functional Partners:

cinA

0.907

SER53589.1

0.821

SER04351.1

0.623

SEQ94746.1

0.587

SER39417.1

0.554

SER23046.1

0.524

SER19245.1

0.515

SEQ64423.1

0.513

SEQ68772.1

0.483

SEQ68741.1

0.453

Your Current Organism:

Granulicatella balaenopterae

NCBI taxonomy Id: 137733
Other names: ATCC 700813, Abiotrophia balaenopterae, CCUG 37380, CIP 105938, DSM 15827, G. balaenopterae, strain M1975/96/1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEQ64423.1	SEQ68741.1	SAMN05421767_10323	SAMN05421767_10436	Cna protein B-type domain-containing protein.	Cna protein B-type domain-containing protein.	0.775
SEQ64423.1	SEQ68772.1	SAMN05421767_10323	SAMN05421767_10437	Cna protein B-type domain-containing protein.	LPXTG-motif cell wall anchor domain-containing protein.	0.774
SEQ64423.1	SEQ94746.1	SAMN05421767_10323	SAMN05421767_1125	Cna protein B-type domain-containing protein.	Cna protein B-type domain-containing protein.	0.756
SEQ64423.1	SER23046.1	SAMN05421767_10323	SAMN05421767_1278	Cna protein B-type domain-containing protein.	Putative ABC transport system permease protein.	0.479
SEQ64423.1	SER39388.1	SAMN05421767_10323	SAMN05421767_1461	Cna protein B-type domain-containing protein.	Sortase B.	0.513
SEQ64423.1	SER53589.1	SAMN05421767_10323	SAMN05421767_1801	Cna protein B-type domain-containing protein.	Cna protein B-type domain-containing protein.	0.716
SEQ68741.1	SEQ64423.1	SAMN05421767_10436	SAMN05421767_10323	Cna protein B-type domain-containing protein.	Cna protein B-type domain-containing protein.	0.775
SEQ68741.1	SER23046.1	SAMN05421767_10436	SAMN05421767_1278	Cna protein B-type domain-containing protein.	Putative ABC transport system permease protein.	0.435
SEQ68741.1	SER39388.1	SAMN05421767_10436	SAMN05421767_1461	Cna protein B-type domain-containing protein.	Sortase B.	0.453
SEQ68772.1	SEQ64423.1	SAMN05421767_10437	SAMN05421767_10323	LPXTG-motif cell wall anchor domain-containing protein.	Cna protein B-type domain-containing protein.	0.774
SEQ68772.1	SER39388.1	SAMN05421767_10437	SAMN05421767_1461	LPXTG-motif cell wall anchor domain-containing protein.	Sortase B.	0.483
SEQ68772.1	SER53589.1	SAMN05421767_10437	SAMN05421767_1801	LPXTG-motif cell wall anchor domain-containing protein.	Cna protein B-type domain-containing protein.	0.664
SEQ94746.1	SEQ64423.1	SAMN05421767_1125	SAMN05421767_10323	Cna protein B-type domain-containing protein.	Cna protein B-type domain-containing protein.	0.756
SEQ94746.1	SER39388.1	SAMN05421767_1125	SAMN05421767_1461	Cna protein B-type domain-containing protein.	Sortase B.	0.587
SEQ94746.1	SER53589.1	SAMN05421767_1125	SAMN05421767_1801	Cna protein B-type domain-containing protein.	Cna protein B-type domain-containing protein.	0.739
SER04351.1	SER39388.1	SAMN05421767_11623	SAMN05421767_1461	LPXTG-motif cell wall anchor domain-containing protein/pilin isopeptide linkage domain-containing protein.	Sortase B.	0.623
SER19245.1	SER23046.1	SAMN05421767_12422	SAMN05421767_1278	Putative ABC transport system permease protein.	Putative ABC transport system permease protein.	0.520
SER19245.1	SER39388.1	SAMN05421767_12422	SAMN05421767_1461	Putative ABC transport system permease protein.	Sortase B.	0.515
SER19245.1	cinA	SAMN05421767_12422	SAMN05421767_10147	Putative ABC transport system permease protein.	Nicotinamide-nucleotide amidase; Belongs to the CinA family.	0.859
SER23046.1	SEQ64423.1	SAMN05421767_1278	SAMN05421767_10323	Putative ABC transport system permease protein.	Cna protein B-type domain-containing protein.	0.479