Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HxlR | KXB63629.1 | HMPREF3186_00108 | HMPREF3186_00107 | Putative HTH-type transcriptional activator HxlR; Psort location: Cytoplasmic, score: 7.50. | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | 0.773 |
HxlR | KXB63631.1 | HMPREF3186_00108 | HMPREF3186_00109 | Putative HTH-type transcriptional activator HxlR; Psort location: Cytoplasmic, score: 7.50. | KEGG: efc:EFAU004_01046 9.1e-48 nitroreductase family protein K07078. | 0.562 |
KXB63629.1 | HxlR | HMPREF3186_00107 | HMPREF3186_00108 | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | Putative HTH-type transcriptional activator HxlR; Psort location: Cytoplasmic, score: 7.50. | 0.773 |
KXB63629.1 | KXB63631.1 | HMPREF3186_00107 | HMPREF3186_00109 | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | KEGG: efc:EFAU004_01046 9.1e-48 nitroreductase family protein K07078. | 0.511 |
KXB63631.1 | HxlR | HMPREF3186_00109 | HMPREF3186_00108 | KEGG: efc:EFAU004_01046 9.1e-48 nitroreductase family protein K07078. | Putative HTH-type transcriptional activator HxlR; Psort location: Cytoplasmic, score: 7.50. | 0.562 |
KXB63631.1 | KXB63629.1 | HMPREF3186_00109 | HMPREF3186_00107 | KEGG: efc:EFAU004_01046 9.1e-48 nitroreductase family protein K07078. | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | 0.511 |