STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB63355.1N-acetylmuramoyl-L-alanine amidase; KEGG: sui:SSUJS14_1257 4.9e-48 cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase; Psort location: Cellwall, score: 8.75. (221 aa)    
Predicted Functional Partners:
KXB62869.1
Hypothetical protein.
  
    0.539
KXB63359.1
Cell wall-binding repeat protein; KEGG: smb:smi_1563 2.4e-27 lytC; choline-binding protein LytC, 4-beta-N-acetylmuramidase, Cpb13; Psort location: Extracellular, score: 8.91.
       0.524
KXB61959.1
Tetratricopeptide repeat protein; KEGG: sax:USA300HOU_1551 1.0e-22 peptidase; Psort location: CytoplasmicMembrane, score: 10.00.
  
   0.489
KXB63356.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
       0.482
PbpX
KEGG: mcl:MCCL_0753 1.1e-154 pbpA; penicillin-binding protein 1; K12552 penicillin-binding protein 1; Psort location: CytoplasmicMembrane, score: 9.51.
 
  
 0.470
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 4.5e-15 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: CytoplasmicMembrane, score: 8.16; Belongs to the CinA family.
 
     0.465
KXB64179.1
LysM domain protein; KEGG: bst:GYO_1230 2.0e-27 endopeptidase LytF; Psort location: Cellwall, score: 9.21.
 
  
 0.411
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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