STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnzPutative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (306 aa)    
Predicted Functional Partners:
Fur
KEGG: mct:MCR_0333 1.0e-16 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 9.97; Belongs to the Fur family.
  
    0.784
NudF
Hydrolase, NUDIX family; KEGG: eat:EAT1b_0457 7.8e-42 NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase; Psort location: Cytoplasmic, score: 7.50.
       0.774
KXB63144.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
CvfB
Virulence factor B; KEGG: mai:MICA_2002 9.2e-09 3-deoxy-7-phosphoheptulonate synthase K00243; Psort location: Cytoplasmic, score: 7.50; Belongs to the CvfB family.
  
    0.588
KXB63140.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.575
KXB63146.1
Hypothetical protein; KEGG: fnu:FN0946 2.3e-19 zinc metalloprotease; K01417 K07043; Psort location: Cytoplasmic, score: 7.50.
  
    0.512
YwpJ_2
Cytidine deaminase; KEGG: efc:EFAU004_00650 1.7e-46 HAD superfamily hydrolase K07024.
  
  
 0.502
KXB63145.1
Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.501
KXB59370.1
tRNA nucleotidyltransferase/poly(A) polymerase family protein; KEGG: lsi:HN6_00620 2.4e-70 CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); Psort location: Cytoplasmic, score: 7.50.
 
  
 0.450
RecJ
single-stranded-DNA-specific exonuclease RecJ; KEGG: sha:SH1285 1.8e-131 hypothetical protein; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 7.50.
   
   0.445
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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