STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NudFHydrolase, NUDIX family; KEGG: eat:EAT1b_0457 7.8e-42 NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase; Psort location: Cytoplasmic, score: 7.50. (189 aa)    
Predicted Functional Partners:
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 
 0.918
PgcA
KEGG: cst:CLOST_1665 7.7e-186 phosphoglucomutase; Psort location: Cytoplasmic, score: 7.50.
  
  0.911
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
 0.841
Fur
KEGG: mct:MCR_0333 1.0e-16 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 9.97; Belongs to the Fur family.
       0.794
rnz
Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.774
KXB63144.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
CshB
Putative DEAD-box ATP-dependent RNA helicase CshB; KEGG: suz:MS7_1575 1.2e-111 cshB; DEAD/DEAH box helicase; Psort location: Cytoplasmic, score: 9.97.
  
 0.669
KXB59054.1
KEGG: sah:SaurJH1_2156 5.1e-141 DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD; Psort location: Cytoplasmic, score: 9.95.
  
 0.669
KXB63140.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.572
CvfB
Virulence factor B; KEGG: mai:MICA_2002 9.2e-09 3-deoxy-7-phosphoheptulonate synthase K00243; Psort location: Cytoplasmic, score: 7.50; Belongs to the CvfB family.
       0.570
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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