STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB62854.1Hypothetical protein; KEGG: ttm:Tthe_2745 0.0048 radical SAM protein; K01012 biotin synthetase. (90 aa)    
Predicted Functional Partners:
KXB62855.1
Selenium metabolism protein YedF; KEGG: drm:Dred_1242 2.5e-22 SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A; Psort location: Cytoplasmic, score: 7.50; Belongs to the sulfur carrier protein TusA family.
     
 0.785
SelD
KEGG: cpy:Cphy_1486 3.6e-101 selenide, water dikinase K01008; Psort location: Cytoplasmic, score: 7.50.
       0.713
SelB
KEGG: clj:CLJU_c27700 2.9e-131 selenocysteine-specific translation elongation factor K03833; Psort location: Cytoplasmic, score: 9.97.
       0.577
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.492
IscS_1
KEGG: cpy:Cphy_1489 1.3e-96 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
     
 0.478
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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