STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YkoD_1KEGG: snc:HMPREF0837_11004 9.7e-76 ABC transporter ATP-binding protein K02006; Psort location: CytoplasmicMembrane, score: 9.99. (456 aa)    
Predicted Functional Partners:
KXB62878.1
Cobalt transport protein; KEGG: sap:Sulac_1647 2.0e-05 monosaccharide-transporting ATPase K02006; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.985
KXB62876.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.954
EcfT_2
Cobalt transport protein; KEGG: bya:BANAU_0146 3.8e-49 ybaF; putative ABC transporter ATP-binding protein K02008; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.912
EcfT_1
Cobalt transport protein; KEGG: sgg:SGGBAA2069_c22910 6.8e-06 cbiQ; cobalt import ATP-binding/permease K02008; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.850
MetN2_3
KEGG: snc:HMPREF0837_11946 3.8e-42 ABC transporter ATP-binding protein K01990; Psort location: CytoplasmicMembrane, score: 8.78.
  
     0.480
KXB59106.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.457
KXB59670.1
Transporter, major facilitator family protein; KEGG: sro:Sros_9221 2.4e-05 dTMP kinase K00943; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.455
TehB_1
KEGG: eab:ECABU_c16620 6.5e-54 tehB; tellurite resistance protein TehB.
       0.429
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.419
GsiA_3
Putative oligopeptide ABC transporter, ATP-binding protein AppF; KEGG: efc:EFAU004_00135 3.3e-114 oppF; peptide ABC transporter ATP-binding protein K02032; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
0.411
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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