STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB62237.1Pseudouridylate synthase; KEGG: tte:TTE0052 1.9e-63 RsuA; 16S rRNA uridine-516 pseudouridylate synthase; K06183 16S rRNA pseudouridine516 synthase; Psort location: Cytoplasmic, score: 9.97. (235 aa)    
Predicted Functional Partners:
KXB62236.1
Polysaccharide biosynthesis protein; KEGG: ssr:SALIVB_0347 4.0e-54 cystathionine gamma-synthase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.842
KXB62238.1
Putative dipeptidase PepV; KEGG: bck:BCO26_2052 2.9e-106 dipeptidase; K01439 succinyl-diaminopimelate desuccinylase; Psort location: Cytoplasmic, score: 7.50.
       0.759
ExoA
Exodeoxyribonuclease III; KEGG: cpr:CPR_1192 4.6e-101 xth; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.97.
  
    0.745
cmk
Cytidylate kinase; KEGG: sri:SELR_19400 1.1e-49 cmk; putative cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.716
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.695
KXB62235.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.678
RsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.540
ScpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.525
pheT
KEGG: sha:SH1822 4.3e-199 pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97.
     
 0.455
GlnR
Putative HTH-type transcriptional regulator GlnR; KEGG: rpm:RSPPHO_00344 3.2e-06 MerR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.67.
       0.429
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.