STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB62216.1Hypothetical protein; KEGG: sum:SMCARI_281 0.00013 hypothetical protein; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50. (331 aa)    
Predicted Functional Partners:
RpsT
Ribosomal protein S20; KEGG: apb:SAR116_1560 2.5e-06 30S ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.837
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.834
rpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00042 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.832
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.826
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.823
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 2.4e-15 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.822
rpmF
Ribosomal protein L32; KEGG: apb:SAR116_0011 3.1e-08 50S ribosomal protein L32 K02911; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.821
rpmI
Ribosomal protein L35; Psort location: Cytoplasmic, score: 9.64; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.818
rpmJ
Ribosomal protein L36; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.816
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.815
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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