STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB62131.1GIY-YIG catalytic domain protein; KEGG: cnc:CNE_2c01410 6.0e-12 cho1; excinuclease Cho K07461. (103 aa)    
Predicted Functional Partners:
KXB62130.1
Hypothetical protein; KEGG: sud:ST398NM01_0553 6.6e-45 Methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.987
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.885
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.794
KXB62129.1
KEGG: bcl:ABC0052 2.2e-29 holB; DNA polymerase III subunit delta' K02341; Psort location: Cytoplasmic, score: 7.50.
       0.794
KXB62133.1
Hypothetical protein; KEGG: cni:Calni_1903 0.00097 signal transduction histidine kinase, nitrogen specific, ntrb; K07709 two-component system, NtrC family, sensor histidine kinase HydH; Psort location: CytoplasmicMembrane, score: 9.55.
       0.773
PatA
Putative aromatic-amino-acid transaminase; KEGG: stb:SGPB_0023 7.5e-92 patA; aminotransferase K00841; Psort location: Cytoplasmic, score: 7.50.
       0.693
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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